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描述
–exp.file the gene expression matrix ,gene symbol as row,sample as column ,input txt format with tab–separated.
–pheno.file the sample group file ,the first column is sample name,the second column is the classification labels, input txt format with tab–separated.
![](http://www.biocloudservice.com/wordpress/wp-content/uploads/2023/01/640-61-300x258.png)
1.est_score.tsv(各个样本的StromalScore、ImmuneScore、ESTIMATEScore和TumorPurity)
![](http://www.biocloudservice.com/wordpress/wp-content/uploads/2023/01/640-1-4-267x300.png)
2.immune_score_box.pdf(两组间免疫评分的箱式图以及显著性p.value值)
![](http://www.biocloudservice.com/wordpress/wp-content/uploads/2023/01/640-2-4-300x297.png)
3.Stromal_score_box.pdf(两组间基质评分的箱式图以及显著性p.value值)
![](http://www.biocloudservice.com/wordpress/wp-content/uploads/2023/01/640-3-4-300x298.png)
4.ESTIMATE_Score_box.pdf(两组间ESTIMATE评分的箱式图以及显著性p.value值,ESTIMATE评分是将免疫评分与基质评分相加得到的)
![](http://www.biocloudservice.com/wordpress/wp-content/uploads/2023/01/640-4-4-300x300.png)
5.TumorPurity_box.pdf(两组间肿瘤纯度的箱式图以及显著性p.value值)
![](http://www.biocloudservice.com/wordpress/wp-content/uploads/2023/01/640-5-3-300x300.png)
6.estimated_purity_plots(该文件夹下是各个样本肿瘤纯度和ESTIMATE评分的相关性散点图,一般是负相关)
![](http://www.biocloudservice.com/wordpress/wp-content/uploads/2023/01/640-6-3-300x298.png)